Home on the Range

Non-fiction by Roger K. Kramer

Imdieke, Henry (1835 - 1923)

This biographical summary was created by the Works Progress Administration (WPA) between 1936 and 1939

A simple, automated device for the precise addition of liquids

Metering liquid reagents into reaction mixtures in a controlled and reproducible manner has often been a problem in synthetic chemistry. Carrying out the real simultaneous addition of two or more liquid reagents (concurrent additions) is even more inconvenient. Difficulties increase when addition volumes become small, when addition times become long, or when the reagents are corrosive or air-sensitive. We have constructed and tested an inexpensive, automated device for the slow, precise delivery of liquid reagents into laboratory-scale reaction mixtures. Controlled by a standard personal computer, this slow adder can accommodate liquid volumes from hundreds of microlitres to litres and addition times from minutes to days. Its glass and Teflon construction makes it useful for nearly all reagents. By using multiple slow adders, true concurrent addition of several liquids can be easily achieved

New dynamics in cerebellar Purkinje cells: torus canards

We describe a transition from bursting to rapid spiking in a reduced mathematical model of a cerebellar Purkinje cell. We perform a slow-fast analysis of the system and find that -- after a saddle node bifurcation of limit cycles -- the full model dynamics follow temporarily a repelling branch of limit cycles. We propose that the system exhibits a dynamical phenomenon new to realistic, biophysical applications: torus canards.Comment: 4 pages; 4 figures (low resolution); updated following peer-review: language and definitions updated, Figures 1 and 4 updated, typos corrected, references added and remove

On the Nature of Pulsar Radio Emission

A theory of pulsar radio emission generation, in which the observed waves are produced directly by maser-type plasma instabilities operating at the anomalous cyclotron-Cherenkov resonance $\omega- k_{\parallel} v_{\parallel} + \omega_B/ \gamma_{res}=0$ and the Cherenkov-drift resonance $\omega- k_{\parallel} v_{\parallel} - k_{\perp} u_d =0$, is capable of explaining the main observational characteristics of pulsar radio emission. The instabilities are due to the interaction of the fast particles from the primary beam and the tail of the distribution with the normal modes of a strongly magnetized one-dimensional electron-positron plasma. The waves emitted at these resonances are vacuum-like, electromagnetic waves that may leave the magnetosphere directly. In this model, the cyclotron-Cherenkov instability is responsible for core emission pattern and the Cherenkov-drift instability produces conal emission. The conditions for the development of the cyclotron-Cherenkov instability are satisfied for both typical and millisecond pulsars provided that the streaming energy of the bulk plasma is not very high $\gamma_p \approx 10$. In a typical pulsar the cyclotron-Cherenkov and Cherenkov-drift resonances occur in the outer parts of magnetosphere at $r_{res} \approx 10^9 cm$. This theory can account for various aspects of pulsar phenomenology including the morphology of the pulses, their polarization properties and their spectral behavior. We propose several observational tests for the theory. The most prominent prediction are the high altitudes of the emission region and the linear polarization of conal emission in the plane orthogonal to the local osculating plane of the magnetic field.Comment: 39 pages, 10 figure

A Functional Genomic Yeast Screen to Identify Pathogenic Bacterial Proteins

Many bacterial pathogens promote infection and cause disease by directly injecting into host cells proteins that manipulate eukaryotic cellular processes. Identification of these translocated proteins is essential to understanding pathogenesis. Yet, their identification remains limited. This, in part, is due to their general sequence uniqueness, which confounds homology-based identification by comparative genomic methods. In addition, their absence often does not result in phenotypes in virulence assays limiting functional genetic screens. Translocated proteins have been observed to confer toxic phenotypes when expressed in the yeast Saccharomyces cerevisiae. This observation suggests that yeast growth inhibition can be used as an indicator of protein translocation in functional genomic screens. However, limited information is available regarding the behavior of non-translocated proteins in yeast. We developed a semi-automated quantitative assay to monitor the growth of hundreds of yeast strains in parallel. We observed that expression of half of the 19 Shigella translocated proteins tested but almost none of the 20 non-translocated Shigella proteins nor ∼1,000 Francisella tularensis proteins significantly inhibited yeast growth. Not only does this study establish that yeast growth inhibition is a sensitive and specific indicator of translocated proteins, but we also identified a new substrate of the Shigella type III secretion system (TTSS), IpaJ, previously missed by other experimental approaches. In those cases where the mechanisms of action of the translocated proteins are known, significant yeast growth inhibition correlated with the targeting of conserved cellular processes. By providing positive rather than negative indication of activity our assay complements existing approaches for identification of translocated proteins. In addition, because this assay only requires genomic DNA it is particularly valuable for studying pathogens that are difficult to genetically manipulate or dangerous to culture

A critical revision of the churchill snoutfish, genus Petrocephalus Marcusen, 1854 (Actinopterygii: Teleostei: Mormyridae), from southern and eastern Africa, with the recognition of Petrocephalus tanensis, and the description of five new species

We morphologically and genetically studied the southern African electric fish Petrocephalus catostoma, or churchill, and its six nominal species, five of which by synonymization (three valid subspecies). We reinstate the synonymized species, and recognize Petrocephalus tanensis (Whitehead and Greenwood, 1959) from the Tana River in Kenya, also using electric organ discharges. The Okavango delta (Botswana) is inhabited by Petrocephalus okavangensis sp. nov. and Petrocephalus magnitrunci sp. nov., and the Namibian Cunene River by Petrocephalus magnoculis sp. nov. We recognize Petrocephalus petersi sp. nov. for the Lower Zambezi River (Mozambique), and Petrocephalus longicapitis sp. nov. for the Upper Zambezi River (Namibia). The Lufubu River in Northern Zambia is inhabited by Petrocephalus longianalis sp. nov. For the southern churchill, Petrocephalus wesselsi Kramer and Van der Bank, 2000, we confirm intraspecific and interspecific differentiation. Sequence data from mitochondrial DNA confirm differentiation of two new western and two eastern species, forming mutual sister groups